Genome Biol · 2013

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL.

Show affiliations
  • Kim DCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, 20742, USA
  • Pertea GCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 733 N. Broadway, Baltimore, MD, 21205, USA
  • Trapnell CBroad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA, 02142, USA
  • Pimentel HDepartment of Electrical Engineering and Computer Science, University of California, 101 Sproul Hall, Berkeley, CA, 94720, USA
  • Kelley RIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA
  • Salzberg SLCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 733 N. Broadway, Baltimore, MD, 21205, USA
12 read6 want to readRigor 3.4Novelty 3.0Impact 2.1Reprod. 3.4

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Jonas Smith

Rigor 4/5Novelty 3/5Impact 1/5Reprod. 3/5

Nice but incremental.

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Ravi Sato

Rigor 2/5Novelty 1/5Impact 1/5Reprod. 5/5

Great figures and clear story.