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An input-controlled model system for identification of MHC bound peptides enabling laboratory comparisons of immunopeptidome experiments
Klatt MG, Aretz ZEH, Curcio M, Gejman RS, Jones HF, Scheinberg DA
Journal of proteomics · 2020
Solving an MHC allele-specific bias in the reported immunopeptidome
Klatt MG, Mack KN, Bai Y, Aretz ZEH, Nathan LI, Mun SS, Dao T, Scheinberg DA
JCI insight · 2020
Diurnal variations in the expression of core-clock genes correlate with resting muscle properties and predict fluctuations in exercise performance across the day
Basti A, Yalçin M, Herms D, Hesse J, Aboumanify O, Li Y, Aretz Z, Garmshausen J, El-Athman R, Hastermann M, Blottner D, Relógio A
BMJ open sport & exercise medicine · 2021
SCANPY: large-scale single-cell gene expression data analysis
Wolf FA, Angerer P, Theis FJ
Genome biology · 2018
RegVelo: Gene-regulatory-informed dynamics of single cells
Wang W, Hu Z, Weiler P, Mayes S, Lange M, Fountain DM, Haug JO, Wang J, Xue Z, Sauka-Spengler T, Theis FJ
Cell · 2026
UniversalEPI: robust prediction of cell type-specific and differential chromatin interactions from DNA sequence and chromatin accessibility
Grover A, Zhang L, Muser T, Häfliger S, Wang M, Yates J, Indilewitsch MC, Wang Y, Van Allen EM, Theis FJ, Ibarra IL, Krymova E, Boeva V
Nucleic acids research · 2026