Nat Protoc · 2013
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A.
Show affiliations
- Haas BJ — Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA, 02142, USA.
- Papanicolaou A — CSIRO Ecosystem Sciences, Black Mountain Labs, Canberra, ACT 2601, Australia.
- Yassour M — Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA, 02142, USA.
- Grabherr M — Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
- Blood PD — Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.
- Bowden J — CSIRO Information Management & Technology, 306 Carmody Rd, St Lucia QLD 4067, Australia.
- Couger MB — Department of Microbiology and Molecular Genetics, Oklahoma State University, USA.
- Eccles D — Genomics Research Centre, Griffith University, Gold Coast Campus, Qld 4222, Australia.
- Li B — Department of Computer Sciences, University of Wisconsin, Madison, WI, 53706, USA.
- Lieber M — Technische Universität Dresden, Dresden, Saxony 01062, Germany.
- MacManes MD — University of California, Berkeley and California Institute for Quantitative Biosciences Berkeley, CA 94720, USA.
- Ott M — CSIRO Ecosystem Sciences, Black Mountain Labs, Canberra, ACT 2601, Australia.
- Orvis J — Institute for Genome Sciences, Baltimore, MD, 21201, USA.
- Pochet N — Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA, 02142, USA.
- Strozzi F — Parco Tecnologico Padano, Loc. Cascina Codazza, 26900 Lodi, Italy.
- Weeks N — Corn Insects and Crop Genetics Research Unit, United States Department of Agriculture--Agricultural Research Service, Ames, IA 50011, USA.
- Westerman R — Genomics facility, Purdue University, West Lafayette, IN, 47907, USA.
- William T — GWT-TUD GmbH, Blasewitzer Strasse 43, Dresden, Saxony 01307, Germany.
- Dewey CN — Department of Computer Sciences, University of Wisconsin, Madison, WI, 53706, USA.
- Henschel R — Indiana University, 2709 East 10th Street, Bloomington, IN 47408,USA.
- LeDuc RD — Indiana University, 2709 East 10th Street, Bloomington, IN 47408,USA.
- Friedman N — The Selim and Rachel Benin School of Computer Science, The Hebrew University of Jerusalem, Jerusalem 91904, Israel.
- Regev A — Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA, 02142, USA.
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