Tristan Aretz’s top 4 papers
CD8 co-receptor modulates the specificity profile of the 1G4 TCR against NY-ESO-1
Jones HF, Aretz ZEH, Gejman RS, Cicic T, Scheinberg DA
Molecular therapy : the journal of the American Society of Gene Therapy · 2026
SCANPY: large-scale single-cell gene expression data analysis
Wolf FA, Angerer P, Theis FJ
Genome biology · 2018
Quantitative characterization of cell niches in spatially resolved omics data
Birk S, Bonafonte-Pardàs I, Feriz AM, Boxall A, Agirre E, Memi F, Maguza A, Yadav A, Armingol E, Fan R, Castelo-Branco G, Theis FJ, Bayraktar OA, Talavera-López C, Lotfollahi M
Nature genetics · 2025
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See all read (6) →Quantitative characterization of cell niches in spatially resolved omics data
Birk S, Bonafonte-Pardàs I, Feriz AM, Boxall A, Agirre E, Memi F, Maguza A, Yadav A, Armingol E, Fan R, Castelo-Branco G, Theis FJ, Bayraktar OA, Talavera-López C, Lotfollahi M
Nature genetics · 2025
High-parameter spatial multi-omics through histology-anchored integration
Liu Y, Wang C, Wang Z, Chen L, Li Z, Song J, Zou Q, Gao R, Qian BZ, Feng X, Guan R, Yuan Z
Nature methods · 2026
SCANPY: large-scale single-cell gene expression data analysis
Wolf FA, Angerer P, Theis FJ
Genome biology · 2018
RegVelo: Gene-regulatory-informed dynamics of single cells
Wang W, Hu Z, Weiler P, Mayes S, Lange M, Fountain DM, Haug JO, Wang J, Xue Z, Sauka-Spengler T, Theis FJ
Cell · 2026
An input-controlled model system for identification of MHC bound peptides enabling laboratory comparisons of immunopeptidome experiments
Klatt MG, Aretz ZEH, Curcio M, Gejman RS, Jones HF, Scheinberg DA
Journal of proteomics · 2020
CD8 co-receptor modulates the specificity profile of the 1G4 TCR against NY-ESO-1
Jones HF, Aretz ZEH, Gejman RS, Cicic T, Scheinberg DA
Molecular therapy : the journal of the American Society of Gene Therapy · 2026
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- Solving an MHC allele-specific bias in the reported immunopeptidome
- Diurnal variations in the expression of core-clock genes correlate with resting muscle properties and predict fluctuations in exercise performance across the day
- UniversalEPI: robust prediction of cell type-specific and differential chromatin interactions from DNA sequence and chromatin accessibility
- Challenges and solutions for therapeutic TCR-based agents