All read papers (9)
BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis
Singhal V, Chou N, Lee J, Yue Y, Liu J, Chock WK, Lin L, Chang YC, Teo EML, Aow J, Lee HK, Chen KH, Prabhakar S.
2024
NK Cells Stimulate Recruitment of cDC1 into the Tumor Microenvironment Promoting Cancer Immune Control
Böttcher JP, Bonavita E, Chakravarty P, Blees H, Cabeza-Cabrerizo M, Sammicheli S, Rogers NC, Sahai E, Zelenay S, Reis e Sousa C
Cell · 2018
Quantitative characterization of cell niches in spatially resolved omics data
Birk S, Bonafonte-Pardàs I, Feriz AM, Boxall A, Agirre E, Memi F, Maguza A, Yadav A, Armingol E, Fan R, Castelo-Branco G, Theis FJ, Bayraktar OA, Talavera-López C, Lotfollahi M
Nature genetics · 2025
High-parameter spatial multi-omics through histology-anchored integration
Liu Y, Wang C, Wang Z, Chen L, Li Z, Song J, Zou Q, Gao R, Qian BZ, Feng X, Guan R, Yuan Z
Nature methods · 2026
Diurnal variations in the expression of core-clock genes correlate with resting muscle properties and predict fluctuations in exercise performance across the day
Basti A, Yalçin M, Herms D, Hesse J, Aboumanify O, Li Y, Aretz Z, Garmshausen J, El-Athman R, Hastermann M, Blottner D, Relógio A
BMJ open sport & exercise medicine · 2021
SCANPY: large-scale single-cell gene expression data analysis
Wolf FA, Angerer P, Theis FJ
Genome biology · 2018
RegVelo: Gene-regulatory-informed dynamics of single cells
Wang W, Hu Z, Weiler P, Mayes S, Lange M, Fountain DM, Haug JO, Wang J, Xue Z, Sauka-Spengler T, Theis FJ
Cell · 2026
An input-controlled model system for identification of MHC bound peptides enabling laboratory comparisons of immunopeptidome experiments
Klatt MG, Aretz ZEH, Curcio M, Gejman RS, Jones HF, Scheinberg DA
Journal of proteomics · 2020
CD8 co-receptor modulates the specificity profile of the 1G4 TCR against NY-ESO-1
Jones HF, Aretz ZEH, Gejman RS, Cicic T, Scheinberg DA
Molecular therapy : the journal of the American Society of Gene Therapy · 2026